Guillaume Beslon

Professor

Team(s)	Beagle
Institution	Institut National des Sciences Appliquées de Lyon
Location	CEI (INRIA)
Email	guillaume.beslon at liris.cnrs.fr
Professional phone number	04.72.43.74.94
Personal page	http://liris.cnrs.fr/~gbeslon/

Publications (IdHAL : gbeslon)

Publications LIRIS pour Guillaume Beslon (142)

2027 (1)

Conferences (1)

International conferences with peer review (1)

Hugo Daudey, David Parsons, Eric Tannier, Vincent Daubin, Bastien Boussau, Vincent Liard, Romain Gallé, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2027). "Aevol 4b: Bridging the gap between artificial life and bioinformatics". International Conference for Artificial Life (ALIFE ISAL 2024), - 26 juillet 2027, Copenhague (Denmark), pp. 41-49. HAL : hal-04667220. .

2024 (1)

Others (1)

Théotime Grohens, Sam Meyer & Guillaume Beslon (2024). "Emergence of Supercoiling-Mediated Regulatory Networks through Bacterial Chromosome Organization". doi : 10.1101/2022.09.23.509185. HAL : hal-04398893. .

2023 (3)

Journals (1)

International journals with peer review (1)

Paul Banse, Juliette Luiselli, David Parsons, Théotime Grohens, Marco Foley, Leonardo Trujillo, Jonathan Rouzaud‐Cornabas, Carole Knibbe & Guillaume Beslon (2023). "Forward‐in‐time simulation of chromosomal rearrangements: The invisible backbone that sustains long‐term adaptation". Molecular Ecology. doi : 10.1111/mec.17234. HAL : hal-04350147. .

Conferences (1)

International conferences with peer review (1)

Reza Kalhor, Guillaume Beslon, Manuel Lafond & Celine Scornavacca (2023). "Classifying the Post-duplication Fate of Paralogous Genes". RECOMB-CG 2023 - 20th conference on Comparative Genomics, 15 avril 2023, Istanbul (Turkey), pp. 1-18. doi : 10.1007/978-3-031-36911-7_1. HAL : hal-04239853. .

Others (1)

Marco Foley, Jonathan Rouzaud-Cornabas, Eric Tannier & Guillaume Beslon (2023). "Towards alife-generated benchmarks for phylogeny". ALignements and PHYlogénie (Alphy), 25 janvier 2023, Grenoble (France). Poster. HAL : hal-04398854.

2022 (7)

Journals (3)

International journals with peer review (3)

Leonardo Trujillo, Paul Banse & Guillaume Beslon (2022). "Getting higher on rugged landscapes: Inversion mutations open access to fitter adaptive peaks in NK fitness landscapes". PLoS Computational Biology, vol. 18, #10, e1010647. doi : 10.1371/journal.pcbi.1010647. ArXiv : arXiv:2210.06804. HAL : hal-03866346. .
Théotime Grohens, Sam Meyer & Guillaume Beslon (2022). "A Genome-Wide Evolutionary Simulation of the Transcription-Supercoiling Coupling". Artificial Life. doi : 10.1162/artl_a_00373. HAL : hal-03912118. .
Miguel A. Fortuna, Guillaume Beslon & Charles Ofria (2022). "Digital evolution: Insights for biologists". Frontiers in Ecology and Evolution. doi : 10.3389/fevo.2022.1037040. HAL : hal-03912093. .

Others (4)

François Smekens, Nicolas Freud, Bruno Sixou, Guillaume Beslon & Jean Michel Létang (2022). "Towards the optimization of ballistics in proton therapy using genetic algorithms: implementation issues". ArXiv : 2205.08283. HAL : hal-03702837.
Théotime Grohens, Sam Meyer & Guillaume Beslon (2022). "A Genome-Wide Evolutionary Simulation of the Transcription-Supercoiling Coupling: extended version". HAL : hal-03667822. .
François Smekens, Nicolas Freud, Bruno Sixou, Guillaume Beslon & Jean Michel Létang (2022). "Variable length genetic algorithm with continuous parameters optimization of beam layout in proton therapy". ArXiv : 2205.08398. HAL : hal-03702842.
Leonardo Trujillo, Paul Banse & Guillaume Beslon (2022). "Inversion mutations attenuate complexity catastrophe in NK fitness landscapes". HAL : hal-04096866. .

2021 (5)

Conferences (3)

International conferences with peer review (3)

Théotime Grohens, Sam Meyer & Guillaume Beslon (2021). "A Genome-Wide Evolutionary Simulation of the Transcription-Supercoiling Coupling". ALIFE 2021 - Conference on Artificial Life, 23 juillet 2021, Prague (Czech Republic). HAL : hal-03242696. .
Leonardo Trujillo, Paul Banse & Guillaume Beslon (2021). "Simulating short-and long-term evolutionary dynamics on rugged landscapes". ALIFE 2021 - Conference on Artificial Life, 23 juillet 2021, Prague (Czech Republic), pp. 1-9. ArXiv : 2105.05520. HAL : hal-03426019. .
Guillaume Beslon, Vincent Liard & Jonathan Rouzaud-Cornabas (2021). "The Complexity Ratchet". CCS 2021 - International Conference on Complex Systems, 29 octobre 2021, Lyon (France). HAL : hal-03511442. .

Book edition (books, chapters, seminars, congress, special numbers) (1)

Guillaume Beslon, Vincent Liard, David P. Parsons & Jonathan Rouzaud-Cornabas (2021). "Of Evolution, Systems and Complexity". Evolutionary Systems Biology II. doi : 10.1007/978-3-030-71737-7_1. HAL : hal-03136122. .

Others (1)

Leonardo Trujillo, Paul Banse & Guillaume Beslon (2021). "Evolutionary escape from local fitness peaks through inversion mutations". CCS 2021 - Conference on Complex Systems. HAL : hal-03426022. .

2020 (4)

Journals (4)

International journals with peer review (4)

Sergio Peignier, Christophe Rigotti & Guillaume Beslon (2020). "Evolutionary Subspace Clustering Using Variable Genome Length". Computational Intelligence, vol. 36, #2, pp. 574-612. doi : 10.1111/coin.12254. HAL : hal-02405598. .
Charles Rocabert, Guillaume Beslon, Carole Knibbe & Samuel Bernard (2020). "Phenotypic noise and the cost of complexity". Evolution - International Journal of Organic Evolution. doi : 10.1111/evo.14083. HAL : hal-02920356. .
Joel Lehman, Jeff Clune, Dusan Misevic, Christoph Adami, Julie Beaulieu, Peter J. Bentley, Samuel Bernard, Guillaume Beslon, David M. Bryson et al. (2020). "The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities". Artificial Life, vol. 26, #2, pp. 274-306. doi : 10.1162/artl_a_00319. ArXiv : 1803.03453. HAL : hal-01735473. .
Vincent Liard, David Parsons, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2020). "The complexity ratchet: Stronger than selection, stronger than evolvability, weaker than robustness". Artificial Life, vol. 26, #1, pp. 38-57. doi : 10.1162/artl_a_00312. HAL : hal-03136077. .

2019 (4)

Journals (2)

International journals with peer review (2)

Carole Knibbe, Guillaume Beslon & Dusan Misevic (2019). "Introduction to the ECAL 2017 Special Issue". Artificial Life, vol. 25, #4, pp. 313-314. doi : 10.1162/artl_a_00298. HAL : hal-02428658. .
Jacob Rutten, Paulien Hogeweg & Guillaume Beslon (2019). "Adapting the engine to the fuel: mutator populations can reduce the mutational load by reorganizing their genome structure". BMC Evolutionary Biology, vol. 19, #1, pp. 1-17. doi : 10.1186/s12862-019-1507-z. HAL : hal-02350040. .

Conferences (1)

International conferences with peer review (1)

Quentin Carde, Marco Foley, Carole Knibbe, David Parsons, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2019). "How to reduce a genome? ALife as a tool to teach the scientific method to school pupils". ALIFE 2019 - Conference on Artificial Life, 2 août 2019, Newcastle (United Kingdom), pp. 497-504. doi : 10.1162/isal_a_00211. HAL : hal-02285718. .

Others (1)

Charles Rocabert, Guillaume Beslon, Carole Knibbe & Samuel Bernard (2019). "Phenotypic Noise and the Cost of Complexity". EvoLyon 2019, 26 novembre 2019, Lyon (France). Poster. HAL : hal-02402443. .

2018 (6)

Conferences (3)

International conferences with peer review (3)

Sergio Peignier, Christophe Rigotti, Anthony Rossi & Guillaume Beslon (2018). "Weight-based search to find clusters around medians in subspaces". SAC 2018 - ACM Symposium On Applied Computing, 13 avril 2018, Pau (France), pp. 1-10. HAL : hal-01869974. .
Guillaume Beslon, Santiago Elena, Paulien Hogeweg, Dominique Schneider & Susan Stepney (2018). "Evolving Living Technologies-Insights from the EvoEvo project". SSBSE 2018 - 10th Symposium on Search-Based Software Engineering, 9 septembre 2018, Montpellier (France), pp. 46-62. doi : 10.1007/978-3-319-99241-9_2. HAL : hal-01882636. .
Vincent Liard, David Parsons, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2018). "The Complexity Ratchet: Stronger than selection, weaker than robustness". ALIFE 2018 - the 2018 conference on artificial Life, 27 juillet 2018, Tokyo (Japan), pp. 1-8. doi : 10.1162/isal_a_00051. HAL : hal-01882628. .

Others (3)

Guillaume Beslon, Vincent Liard & Santiago Elena (2018). "Jump then Climb: can rearrangements predict the occurrence of mutational bursts?". Evolution 2018 - Congress on Evolutionary Biology, 22 août 2018, Montpellier (France). Poster. HAL : hal-01938800. .
Vincent Liard, Jonathan Rouzaud-Cornabas, David Parsons & Guillaume Beslon (2018). "The complexity ratchet: stronger than selection". Beacon congress 2018, 11 août 2018, east-lansing (United States of America). Poster. HAL : hal-01938802. .
Guillaume Beslon, Vincent Liard, David P. Parsons & Jonathan Rouzaud-Cornabas (2018). "In silico experimental evolution shows that complexity can rise even in simple environments". ICSB 2018 - 19th International Conference on Systems Biology, 1 novembre 2018, Lyon (France). Poster. HAL : hal-01939365. .

2017 (8)

Journals (3)

International journals with peer review (3)

Guillaume Beslon & Dominique Schneider (2017). "Isee-resistance : using in silico experimental evolution to sensitize providers on antibiotic resistance". Antimicrobial Resistance and Infection Control, vol. 6Suppl 3, #52, p. 2. HAL : hal-01569262.
Jonas Abernot, Guillaume Beslon, Simon Hickinbotham, Sergio Peignier & Christophe Rigotti (2017). "Evolving Instrument Based on Symbiont-Host Metaphor: a Commensal Computation". Journal of Creative Music Systems, vol. 2, #1, pp. 1-10. doi : 10.5920/JCMS.2017.11. HAL : hal-01596573. .
Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider & Guillaume Beslon (2017). "Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification". PLoS Computational Biology, vol. 13, #3, e1005459 (32 pages. doi : 10.1371/journal.pcbi.1005459.s006. HAL : hal-01508751. .

Conferences (4)

International conferences with peer review (3)

Vincent Liard, Jonathan Rouzaud-Cornabas, Nicolas Comte & Guillaume Beslon (2017). "A 4-base model for the Aevol in-silico experimental evolution platform". European Conference on Artificial Life, 8 septembre 2017, Villeurbanne (France). HAL : hal-01569097. .
Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider & Guillaume Beslon (2017). "Environmental seasonality drives digital populations towards stable cross-feeding". European Conference on Artificial Life (ECAL), 8 septembre 2017, Villeurbanne (France). HAL : hal-01569093. .
Sergio Peignier, Jonas Abernot, Christophe Rigotti & Guillaume Beslon (2017). "EvoMove: Evolutionary-based living musical companion". European Conference on Artificial Life (ECAL), 8 septembre 2017, Villeurbanne (France), pp. 1-8. HAL : hal-01569091. .

National conferences with peer review (1)

Nicolas Comte, Vincent Liard, Carole Knibbe & Guillaume Beslon (2017). "Aevol-4b: Toward a new simulation platform to benchmark phylogenetic tools". ALPHY (ALignments and PHYlogeny), 2 février 2017, Villeurbanne (France). HAL : hal-01569078. .

Others (1)

Guillaume Beslon, Vincent Liard & Santiago F Elena (2017). "Testing evolution predictability using the aevol software". 16th international meeting of the European Society of Evolutionary Biology (ESEB 2017), 25 août 2017, Groningen (Netherlands). Poster. HAL : hal-01577115. .

2016 (25)

Journals (2)

International journals with peer review (2)

Tim Taylor, Mark Bedau, Alastair Channon, David Ackley, Wolfgang Banzhaf, Guillaume Beslon, Emily Dolson, Tom Froese, Simon Hickinbotham et al. (2016). "Open-Ended Evolution: Perspectives from the OEE Workshop in York". Artificial Life, vol. 22, #3, pp. 408-423. doi : 10.1162/ARTL_a_00210. HAL : hal-01371116. .
Wolfgang Banzhaf, Bert Baumgaertner, Guillaume Beslon, René Doursat, James A Foster, Barry Mcmullin, Vinicius Veloso De Melo, Thomas Miconi, Lee Spector et al. (2016). "Defining and simulating open-ended novelty: requirements, guidelines, and challenges.". Theorie in den Biowissenschaften / Theory in Biosciences. doi : 10.1007/s12064-016-0229-7. HAL : hal-01323108.

Conferences (8)

International conferences with peer review (7)

Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider & Guillaume Beslon (2016). "In Silico Experimental Evolution Highlights the Influence of Environmental Seasonality on Bacterial Diversification". 2nd EvoEvo Workshop, satellite workshop of CCS2016, 20 septembre 2016, Amsterdam (Netherlands). HAL : hal-01375677. .
Yoram Vadée-Le-Brun, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2016). "In Silico Experimental Evolution suggests a complex intertwining of selection, robustness and drift in the evolution of genetic networks complexity". Artificial Life, 8 juillet 2016, Cancun (Mexico). HAL : hal-01375645. .
Jonas Abernot, Guillaume Beslon, Simon Hickinbotham, Sergio Peignier & Christophe Rigotti (2016). "A Commensal Architecture for Evolving Living Instruments". Conference on Computer Simulation of Musical Creativity, 19 juin 2016, Huddersfield (United Kingdom), pp. 1-8. HAL : hal-01368034.
Priscila Biller, Carole Knibbe, Guillaume Beslon & Eric Tannier (2016). "Comparative Genomics on Artificial Life". Computability in Europe, 27 juin 2016, Paris (France), pp. 35-44. HAL : hal-01334930.
Guillaume Beslon, Vincent Liard & Santiago Elena (2016). "Evolvability drives innovation in viral genomes". 2nd EvoEvo Workshop, satellite workshop of CCS2016, 20 septembre 2016, Amsterdam (France). HAL : hal-01375665. .
Jacob Rutten, Paulien Hogeweg & Guillaume Beslon (2016). "Evolution of mutator populations in constant environments". 2nd EvoEvo Workshop, satellite workshop of CCS2016, 20 septembre 2016, Amsterdam (Netherlands). HAL : hal-01375669. .
Susan Stepney & Guillaume Beslon (2016). "Open-Endedness: Definitions and Shortcuts". 2nd EvoEvo Workshop, satellite workshop of CCS2016, 20 septembre 2016, Amsterdam (Netherlands). HAL : hal-01375671. .

National conferences with peer review (1)

Priscila Biller, Eric Tannier, Guillaume Beslon & Carole Knibbe (2016). "In silico experimental evolution provides independent and challenging benchmarks for comparative genomics". Journées ouvertes Biologie Informatique Mathématiques, 30 juin 2016, Lyon (France), pp. 79-82. HAL : hal-01375657. .

Reports (14)

Research reports/tecnical reports (14)

Paulien Hogeweg, Guillaume Beslon & Susan Stepney (2016). "EvoEvo Deliverable 3.4". Research report. HAL : hal-01577160. .
Paulien Hogeweg & Guillaume Beslon (2016). "EvoEvo Deliverable 3.3". Research report. HAL : hal-01577156. .
Paulien Hogeweg & Guillaume Beslon (2016). "EvoEvo Deliverable 3.2". Research report. HAL : hal-01577155. .
Paulien Hogeweg & Guillaume Beslon (2016). "EvoEvo Deliverable 3.1". Research report. HAL : hal-01577153. .
Santiago F. Elena, Guillaume Beslon, Otmane Lamrabet & Dominique Schneider (2016). "EvoEvo Deliverable 1.3". Research report. HAL : hal-01577127. .
Dominique Schneider, Guillaume Beslon, Santiago F. Elena & Otmane Lamrabet (2016). "EvoEvo Deliverable 1.6". Research report. HAL : hal-01577131. .
Dominique Schneider, Guillaume Beslon, José-Luis Carrasco, Santiago F. Elena, Otmane Lamrabet & A. Willemsen (2016). "EvoEvo Deliverable 1.5". Research report. HAL : hal-01577130. .
Santiago F. Elena, Guillaume Beslon, Otmane Lamrabet & Dominique Schneider (2016). "EvoEvo Deliverable 1.4". Research report. HAL : hal-01577128. .
Susan Stepney, Guillaume Beslon & Tim Hoverd (2016). "EvoEvo Deliverable 4.3". Research report. HAL : hal-01577166. .
Santiago F. Elena, Dominique Schneider, Guillaume Beslon & Otmane Lamrabet (2016). "EvoEvo Deliverable 1.2". Research report. HAL : hal-01577126. .
Guillaume Beslon, Jonas Abernot, Sergio Peignier & Christophe Rigotti (2016). "EvoEvo Deliverable 5.1". Research report. HAL : hal-01577177. .
Guillaume Beslon & Paulien Hogeweg (2016). "EvoEvo Deliverable 6.6". Research report. HAL : hal-01577185. .
Guillaume Beslon, Jonas Abernot, Sergio Peignier & Christophe Rigotti (2016). "EvoEvo Deliverable 5.2". Research report. HAL : hal-01577180. .
Guillaume Beslon, Jonas Abernot, Santiago F. Elena, Dominique Schneider, Paulien Hogeweg, Susan Stepney & Christophe Rigotti (2016). "EvoEvo Deliverable 6.8". Research report. HAL : hal-01577187. .

Others (1)

Bérénice Batut, Guillaume Beslon & Carole Knibbe (2016). "Unexpected genome inflation and streamlining in variable environments". Journées ouvertes de Biologie Informatique & Mathématiques 2016, 30 juin 2016, Lyon (France). Poster. HAL : hal-01375653.

2015 (11)

Journals (1)

International journals with peer review (1)

Ophélie Arnaud, Sam Meyer, Elodie Vallin, Guillaume Beslon & Olivier Gandrillon (2015). "Temperature-induced variation in gene expression burst size in metazoan cells". BMC Molecular Biology. doi : 10.1186/s12867-015-0048-2. HAL : hal-01248384.

Conferences (4)

International conferences with peer review (4)

Sergio Peignier, Christophe Rigotti & Guillaume Beslon (2015). "Subspace Clustering for all Seasons". EvoEvo Workshop (satellite workshop of ECAL 2015), 24 juillet 2015, york (United Kingdom), pp. 1-3. HAL : hal-01252793. .
Yoram Vadée-Le-Brun, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2015). "Epigenetic inheritance speeds up evolution of artificial organisms". European Conference on Artificial Life, York (United Kingdom). doi : 10.7551/978-0-262-33027-5-ch078. HAL : hal-01248383. .
Charles Rocabert, Carole Knibbe & Guillaume Beslon (2015). "Towards a Integrated Evolutionary Model to Study Evolution of Evolution". EvoEvo Workshop (Satellite workshop of ECAL 2015), 24 juillet 2015, York (United Kingdom). HAL : hal-01252796. .
Sergio Peignier, Christophe Rigotti & Guillaume Beslon (2015). "Subspace Clustering Using Evolvable Genome Structure". Genetic and Evolutionary Computation Conference (GECCO), 11 juillet 2015, Madrid (Spain), pp. 575-582. HAL : hal-01199136.

Reports (6)

Research reports/tecnical reports (6)

Guillaume Beslon & Charles Rocabert (2015). "EvoEvo Deliverable 2.7". Research report. HAL : hal-01577147. .
Guillaume Beslon & Charles Rocabert (2015). "EvoEvo Deliverable 2.6". Research report. HAL : hal-01577144. .
Guillaume Beslon & Charles Rocabert (2015). "EvoEvo Deliverable 2.8". Research report. HAL : hal-01577149. .
Guillaume Beslon, Santiago F. Elena, Paulien Hogeweg, Dominique Schneider & Susan Stepney (2015). "EvoEvo Deliverable 6.5". Research report. HAL : hal-01577184. .
Guillaume Beslon & Charles Rocabert (2015). "EvoEvo Deliverable 2.4". Research report. HAL : hal-01577140. .
Guillaume Beslon & Charles Rocabert (2015). "EvoEvo Deliverable 2.2". Research report. HAL : hal-01577135. .

2014 (10)

Journals (4)

International journals with peer review (4)

Hédi Soula, Bertrand Caré, Guillaume Beslon & Hugues Berry (2014). "Comments to the Editor. Reply to the Comment by V.P. Shkilev on "Anomalous versus slowed-down Brownian diffusion in the ligand-binding equilibrium"". Biophysical Journal, vol. 106, #11, pp. 2544-2546. doi : 10.1016/j.bpj.2014.03.052. HAL : hal-00956603. .
Guillaume Corre, Daniel Stockholm, Ophélie Arnaud, Gaël Kaneko, José Viñuelas, Yoshiaki Yamagata, Thi My Anh Neildez-Nguyen, Jean-Jacques Kupiec, Guillaume Beslon et al. (2014). "Stochastic Fluctuations and Distributed Control of Gene Expression Impact Cellular Memory". PLoS ONE, vol. 9, #12, e115574. doi : 10.1371/journal.pone.0115574. HAL : hal-01370311. .
Stephan Fischer, Samuel Bernard, Guillaume Beslon & Carole Knibbe (2014). "A Model for Genome Size Evolution". Bulletin of Mathematical Biology, vol. 76, #9, pp. 2249-2291. doi : 10.1007/s11538-014-9997-8. HAL : hal-01090984. .
Sam Meyer & Guillaume Beslon (2014). "Torsion-Mediated Interaction between Adjacent Genes". PLoS Computational Biology, vol. 10, #9, e1003785. doi : 10.1371/journal.pcbi.1003785. HAL : hal-01090990. .

Reports (6)

Research reports/tecnical reports (6)

Guillaume Beslon, Santiago F. Elena & Dominique Schneider (2014). "EvoEvo Deliverable 6.2". Research report. HAL : hal-01577183. .
Guillaume Beslon (2014). "EvoEvo Deliverable 6.1". Research report. HAL : hal-01577182. .
Guillaume Beslon, Paulien Hogeweg, Carole Knibbe, Charles Rocabert & Susan Stepney (2014). "EvoEvo Deliverable 2.3". Research report. HAL : hal-01577138. .
Dominique Schneider, Guillaume Beslon, Santiago F. Elena & Otmane Lamrabet (2014). "EvoEvo Deliverable 1.1". Research report. HAL : hal-01577124. .
Guillaume Beslon, Paul Andrews, Carole Knibbe & Charles Rocabert (2014). "EvoEvo Deliverable 2.1". Research report. HAL : hal-01577134. .
Guillaume Beslon, Carole Knibbe & Charles Rocabert (2014). "EvoEvo Deliverable 2.5". Research report. HAL : hal-01577142. .

2013 (5)

Journals (3)

International journals with peer review (3)

Bérénice Batut, David P. Parsons, Stephan Fischer, Guillaume Beslon & Carole Knibbe (2013). "In silico experimental evolution: a tool to test evolutionary scenarios". BMC Bioinformatics, vol. 14, Suppl 15, S11. HAL : hal-00873232. .
Hédi Soula, Bertrand Caré, Guillaume Beslon & Hugues Berry (2013). "Anomalous versus slowed-down Brownian diffusion in the ligand-binding equilibrium". Biophysical Journal, vol. 105, #9, pp. 2064-2073. doi : 10.1016/j.bpj.2013.07.023. ArXiv : 1207.5725. HAL : hal-00720515. .
José Viñuelas, Gaël Kaneko, Antoine Coulon, Elodie Vallin, Valérie Morin, Camila Mejia-Pous, Jean-Jacques Kupiec, Guillaume Beslon & Olivier Gandrillon (2013). "Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts.". BMC Biology, vol. 11, #1, p. 15. doi : 10.1186/1741-7007-11-15. HAL : inserm-00817963. .

Conferences (1)

International conferences with peer review (1)

Guillaume Beslon, Bérénice Batut, David P. Parsons, Dominique Schneider & Carole Knibbe (2013). "An alife game to teach evolution of antibiotic resistance". ECAL - 12th European Conference on Artificial Life - 2013, 6 septembre 2013, Taormina (Italy), pp. 43-50. HAL : hal-00849345.

Book edition (books, chapters, seminars, congress, special numbers) (1)

Hugues Berry & Guillaume Beslon (2013). "De la modélisation comme poésie. La modélisation de systèmes biologiques complexes vue par deux modélisateurs". Modéliser & simuler. Epistémologies et pratiques de la modélisation et de la simulation, Franck Varenne and Marc Silberstein, Editions Matériologiques, Paris. HAL : hal-00815550.

2012 (7)

Journals (5)

International journals with peer review (5)

José Viñuelas, Gaël Kaneko, Antoine Coulon, Guillaume Beslon & Olivier Gandrillon (2012). "Towards experimental manipulation of stochasticity in gene expression.". Progress in Biophysics and Molecular Biology, vol. 100, #1, epub ahead of print. doi : 10.1016/j.pbiomolbio.2012.04.010. HAL : hal-00720054.
Hédi Soula, Antoine Coulon & Guillaume Beslon (2012). "Membrane microdomains emergence through non-homogeneous diffusion.". BMC Biophysics, vol. 5, #1, p. 6. doi : 10.1186/2046-1682-5-6. HAL : inserm-00768564. .
Thomas Hindré, Carole Knibbe, Guillaume Beslon & Dominique Schneider (2012). "New insights into bacterial adaptation through in vivo and in silico experimental evolution". Nature Reviews Microbiology, vol. 10, #5, pp. 352-365. doi : 10.1038/nrmicro2750. HAL : hal-00696231.
Sebastian Grauwin, Guillaume Beslon, Eric Fleury, Sara Franceschelli, Céline Robardet, Jean-Baptiste Rouquier & Pablo Jensen (2012). "Complex Systems Science: Dreams of Universality, Reality of Interdisciplinarity". Journal of the American Society for Information Science and Technology, vol. 63, #7, 10.1002/asi.22644. doi : 10.1002/asi.22644. ArXiv : 1206.2216. HAL : hal-00706567. .
Olivier Gandrillon, Delphine Kolesnik-Antoine, Jean-Jacques Kupiec & Guillaume Beslon (2012). "Chance at the heart of the cell". Progress in Biophysics and Molecular Biology, vol. 110, #1, pp. 1-4. doi : 10.1016/j.pbiomolbio.2012.05.006. HAL : hal-00720052.

Conferences (1)

International conferences with peer review (1)

David Parsons, Carole Knibbe & Guillaume Beslon (2012). "The Paradoxical Effects of Allelic Recombination on Fitness". Proceedings of Artificial Life XIII, 22 juillet 2012, East Lansing (France), pp. 536-537. HAL : hal-00759142.

Others (1)

Bérénice Batut, Mathilde Dumond, Gabriel Marais, Guillaume Beslon & Carole Knibbe (2012). "Simulating evolutionary scenarios to test whether they can induce reductive evolution". SMBE 2012 : Society for Molecular Biology and Evolution, 26 juin 2012, Dublin (Ireland). Poster. HAL : hal-00762597.

2011 (7)

Journals (3)

International journals with peer review (2)

Antoine Coulon, Guillaume Beslon & Hédi Soula (2011). "Enhanced Stimulus Encoding Capabilities with Spectral Selectivity in Inhibitory Circuits by STDP". Neural Computation, vol. 23, #4, pp. 882-908. HAL : inria-00593704.
Vic Norris, Abdallah Zemirline, Patrick Amar, Jean Nicolas Audinot, Pascal Ballet, Eshel Ben-Jacob, Gilles Bernot, Guillaume Beslon, Armelle Cabin et al. (2011). "Computing with bacterial constituents, cells and populations: from bioputing to bactoputing". Theorie in den Biowissenschaften / Theory in Biosciences, vol. 130, #3, pp. 211-228. doi : 10.1007/s12064-010-0118-4. HAL : hal-00643738.

National journals with peer review (1)

Eric Bertin, Guillaume Beslon, Olivier Gandrillon, Sebastian Grauwin, Pablo Jensen & Nicolas Schabanel (2011). "Les complexités : point de vue d'un institut des systèmes complexes". Hermès, La Revue - Cognition, communication, politique, vol. 2, #60, pp. 145-150. doi : 10.4267/2042/45459. HAL : hal-00744520.

Conferences (2)

International conferences with peer review (2)

David Parsons, Carole Knibbe & Guillaume Beslon (2011). "Homologous and Nonhomologous Rearrangements: Interactions and Effects on Evolvability.". Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), 8 août 2011, Paris (France), pp. 622-629. HAL : hal-00696902.
Carole Knibbe, David P. Parsons & Guillaume Beslon (2011). "Parsimonious modeling of scaling laws in genomes and transcriptomes". Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), 8 août 2011, Paris (France), pp. 414-415. HAL : hal-00696870.

Others (2)

François Smekens, Jean-Michel Létang, Nicolas Freud, Bruno Sixou & Guillaume Beslon (2011). "Optimization of proton therapy ballistics using a genetic algorithm". Particle Therapy Co-Operative Group, PTCOG, 8 mai 2011, Philadelphia (US) (United States of America). Poster. HAL : hal-01354428.
José Viñuelas, Gaël Kaneko, Valérie Morin, Elodie Vallin, Antoine Coulon, Camila Meijia-Pous, Guillaume Beslon & Olivier Gandrillon (2011). "Chromatin is a major player in regulating gene expression stochasticity in higher eukaryotic cells". Stochastic Systems Biology conference, 19 juillet 2011, Ascona (Switzerland). Poster. HAL : hal-01354566.

2010 (8)

Journals (4)

International journals with peer review (3)

Antoine Coulon, Olivier Gandrillon & Guillaume Beslon (2010). "On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter.". BMC Systems Biology, vol. 4, p. 2. doi : 10.1186/1752-0509-4-2. HAL : hal-00542455. .
Guillaume Beslon, David Parsons, Yolanda Sanchez-Dehesa, Jose-Maria Peña & Carole Knibbe (2010). "Scaling Laws in Bacterial Genomes: A Side-Effect of Selection of Mutational Robustness". BioSystems, vol. 102, #1, pp. 32-40. doi : 10.1016/j.biosystems.2010.07.009. HAL : inria-00593709.
Guillaume Beslon, David P. Parsons, Jose-Maria Pena, Christophe Rigotti & Yolanda Sanchez-Dehesa (2010). "From Digital Genetics to Knowledge Discovery: Perspectives in Genetic Network Understanding". Intelligent Data Analysis, vol. 14, #2, pp. 173-191. doi : 10.3233/IDA-2010-0415. HAL : hal-00697024.

Other journals (1)

Guillaume Beslon & Joanna Jongwane (2010). "À propos de la validité des modèles". Interstices. HAL : hal-01350237.

Conferences (4)

International conferences with peer review (1)

David P. Parsons, Carole Knibbe & Guillaume Beslon (2010). "Importance of the rearrangement rates on the organization of transcription.". Proceedings of Artificial Life XII, 19 août 2010, Odense (Denmark), pp. 479-486. HAL : hal-00697043.

National conferences with peer review (3)

David P. Parsons, Carole Knibbe & Guillaume Beslon (2010). "Aevol : un modèle individu-centré pour l’étude de la structuration des génomes". MajecSTIC, 13 octobre 2010, Bordeaux (France), inconnue. HAL : hal-01381560.
David P. Parsons, Carole Knibbe & Guillaume Beslon (2010). "Influence of the rearrangement rates on the organization of genome transcription". JOBIM, 7 juin 2010, Montpellier (France), inconnue. HAL : hal-01381518.
David P. Parsons, Carole Knibbe & Guillaume Beslon (2010). "Influence of the rearrangement rates on the organization of genome transcription". Integrative Post-Genomics, 25 novembre 2010, Lyon (France), inconnue. HAL : hal-01381618.

2009 (4)

Conferences (2)

International conferences with peer review (1)

Guillaume Beslon, Yolanda Sanchez-Dehesa, David P. Parsons, Jose Maria Pena & Carole Knibbe (2009). "Scaling Laws in Digital Organisms". Proc. Information Processing in Cells and Tissues IPCAT'09, 5 avril 2009, Ascona (Switzerland), pp. 111-114. HAL : hal-01437632.

National conferences with peer review (1)

David P. Parsons, Guillaume Beslon, Carole Knibbe, Yolanda Sanchez-Dehesa & Jose Maria Pena (2009). "Evolution of scaling laws in artificial regulation networks". Integrative Post-Genomics, 18 novembre 2009, Lyon (France), pp. 22-22. HAL : hal-01437814.

Book edition (books, chapters, seminars, congress, special numbers) (1)

Antoine Coulon, Guillaume Beslon, François Chatelain, Alexandra Fuchs, Olivier Gandrillon, M Gineste, Jean-Jacques Kupiec, Camila Mejia-Perez & Andras Paldi (2009). "Mécanismes moléculaires et fonction biologique de la variabilité de l'expression génique à l'échelle de la cellule unique : une approche systémique". Le Hasard au coeur de la cellule, Syllepse edition, pp. 82-111. doi : 10.3917/edmat.kupie.2011.01.0082. HAL : hal-01499539.

Others (1)

José Viñuelas, Gaël Kaneko, Antoine Coulon, Guillaume Beslon & Olivier Gandrillon (2009). "Relationship between chromosomal features and gene expression stochasticity in higher eukaryotic cells". Integrative Post-Genomics, 18 novembre 2009, Lyon (France). Poster. HAL : hal-01437813.

2008 (13)

Journals (4)

International journals with peer review (2)

Christophe Lavelle, Hugues Berry, Guillaume Beslon, Francisco Ginelli, Jean-Louis Giavitto, Zoï Kapoula, André Le Bivic, Nadine Peyriéras, Ovidiu Radulescu et al. (2008). "From Molecules to Organisms: Towards Multiscale Integrated Models of Biological Systems". Theoretical Biology Insights, vol. 1, pp. 13-22. HAL : inria-00331281.
Yolanda Sanchez-Dehesa, David P. Parsons, Jose Maria Pena & Guillaume Beslon (2008). "Modelling Evolution of Regulatory Networks in Artificial Bacteria". Mathematical Modelling of Natural Phenomena, vol. 3, pp. 27-66. doi : 10.1051/mmnp:2008054. HAL : hal-01500393. .

National journals with peer review (2)

Antoine Coulon, Guillaume Beslon & Olivier Gandrillon (2008). "Large multiprotein structures modeling and simulation: the need for mesoscopic models.". Methods in Molecular Biology, vol. 484, pp. 537-58. doi : 10.1007/978-1-59745-398-1_32. HAL : hal-00294029.
C. Knibbe, J. M. Fayard & Guillaume Beslon (2008). "The topology of the protein network influences the dynamics of gene order: from systems biology to a systemic understanding of evolution". Artificial Life, vol. 14, #1, pp. 149-156. doi : 10.1162/artl.2008.14.1.149. HAL : hal-00391448.

Conferences (6)

International conferences with peer review (1)

Guillaume Beslon, Federica Calevro, Hubert Charles, Jean-Michel Fayard, Carole Knibbe, Stéphane Génieys & Marie-France Sagot (2008). "Evolution des organismes bactériens". Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant", Villeurbanne (France), 12 diapos. HAL : hal-02822501.

National conferences with peer review (5)

Guillaume Beslon (2008). "Evolution of genome structure : a computational approach". Workshop “Evolutionary Dynamics”, Utrecht (Netherlands). HAL : hal-01615228.
Victor Norris, Abdallah Zemirline, Patrick Amar, Pascal Ballet, Eshel Ben Jacob, Gilles Bernot, Guillaume Beslon, Eric Fanchon, Jean-Louis Giavitto et al. (2008). "From bioputing to bactoputing: computing with bacteria". Lille Spring School on Modelling Complex Biological Systems in the Context of Genomics, 11 avril 2008, Paris (France), pp. 123-150. HAL : hal-00340470. .
Guillaume Beslon, Sara Franceschelli & Carole Knibbe (2008). "Petits bricolages en évolution". "Génies de la Bricole et du Bricolage", colloque en hommage à Claude Levy-Strauss, 28 novembre 2008, Lyon (France). HAL : hal-01614309.
Virginie Lefort & Guillaume Beslon (2008). "Optimisation incrémentale de réseaux de neurones RBF pour la régression via un algorithme évolutionnaire : RBF-Gene". Actes 8° Journées Francophones Extraction et Gestion des Connaissances EGC'08, 1 février 2008, Sophia-Antipolis (France), pp. 331-336. HAL : hal-01614293.
Guillaume Beslon, Yolanda Sanchez-Dehesa & Jose Maria Pena (2008). "Modeling evolution of genetic regulation in artificial bacteria". European Conference on Complex Systems, 19 septembre 2008, Jérusalem (Israel), p. 4. HAL : hal-01614302.

HDR, thesis (1)

HDR (1)

Guillaume Beslon (2008). "Apprivoiser la vie". HAL : hal-01470048.

Others (2)

Hédi Soula & Guillaume Beslon (2008). "Modeling membrane micro-domain formation through inhomogeneous diffusion". Integrative Post-Genomics, IPG'08, 21 novembre 2008, Lyon (France). Poster. HAL : hal-01614515.
Antoine Coulon, Olivier Gandrillon & Guillaume Beslon (2008). "Gene expression and the dynamics of transcriptional regulation : a model for theoretical and experimental investigations". Integrative Post-Genomics, IPG'08, 21 novembre 2008, Lyon (France). Poster. HAL : hal-01614314.

2007 (10)

Journals (1)

National journals with peer review (1)

Antoine Coulon, Hédi Soula, Olivier Mazet, Olivier Gandrillon & Guillaume Beslon (2007). "Modélisation cellulaire pour l'émergence de structures multiprotéiques auto-organisées". Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, vol. 26, pp. 123-148. doi : 10.3166/tsi.26.123-148. HAL : hal-01613745.

Conferences (8)

International conferences with peer review (4)

Yolanda Sanchez-Dehesa, Loïc Cerf, Jose Maria Pena, Jean-François Boulicaut & Guillaume Beslon (2007). "Artificial Regulatory Networks Evolution". Proc 1st Int Workshop on Machine Learning for Systems Biology MLSB 07, 25 septembre 2007, Evry (France), pp. 47-52. HAL : hal-01502737. .
Gaël Kaneko, Carole Knibbe & Guillaume Beslon (2007). "Effect of bottlenecks on genome size: investigations by digital genetics". Integrative Post-Genomics, 28 novembre 2007, Lyon (France). HAL : hal-01596355.
Yolanda Sanchez-Dehesa, Jose Maria Pena & Guillaume Beslon (2007). "Generating Data form the Evolution of Artificial Regulatory Networks". Workshop Data Mining in Functional Genomics and Proteomics. Current Trends and Future Directions co-located with ECML/PKDD 07, 21 septembre 2007, Varsovie (Poland), pp. 91-103. HAL : hal-01613779.
Yolanda Sanchez-Dehesa, Guillaume Beslon & Jose Maria Pena (2007). "Modeling evolution of Regulatory Networks in Artificial Organisms". 3rd International Symposium on Computational Life Science CompLife'07, 4 octobre 2007, Utrecht (Netherlands), pp. 87-98. doi : 10.1063/1.2793407. HAL : hal-01613768.

National conferences with peer review (4)

Guillaume Beslon (2007). "Evolution de Second Ordre : le hasard sélectionné.". Spring school on interdisciplinarity in biology "Hasard et Fluctuations en Biologie", Berder (France). HAL : hal-01615166.
Guillaume Beslon (2007). "Systems Biology, where is the network ?". Santa-Fe Institute, Santa-Fe (United States of America). HAL : hal-01615180.
Guillaume Beslon (2007). "Digital Genetics: Modéliser la dynamique évolutive des génomes". Journées communes des clusters environnement et informatique à l'INRIA Montbonnot, Grenoble (France). HAL : hal-01615201.
Yolanda Sanchez-Dehesa, Jose Maria Pena & Guillaume Beslon (2007). "RAevol, un modèle de génétique digitale des réseaux de régulation". Réseaux d'Interactions : Analyse, Modélisation, Simulation, RIAMS 2007, 28 novembre 2007, Lyon (France). HAL : hal-01613852.

Others (1)

Antoine Coulon, Guillaume Beslon & Olivier Gandrillon (2007). "Binding cooperation and competition among transcription factors can cause complex stochastic properties in gene expression". Integrative Post-Genomics, IPG'07, 29 novembre 2007, Lyon (France). Poster. HAL : hal-01613869.

2006 (3)

Journals (1)

International journals with peer review (1)

Wolfgang Banzhaf, Guillaume Beslon, Stephen Christensen, A. James, François Képès, Virginie Lefort, F. Julian, Miroslav Radman & Jeremy J. Ramsden (2006). "Guidelines: From artificial evolution to computational evolution: a research agenda". Nature Reviews Genetics, vol. 7, #9, pp. 729-735. doi : 10.1038/nrg1921. HAL : hal-00793902.

Conferences (2)

National conferences with peer review (2)

Guillaume Beslon (2006). "Evolution et Robustesse : un équilibre complexe aux conséquences inattendues.". Journées de Gerland "Systèmes complexes et biologie", 12 décembre 2006, Lyon (France). HAL : hal-01615165.
Guillaume Beslon (2006). "Multi-Agent Modeling of Nuclear Structures.". Spring workshop on biological systems modeling, Bombannes (France). HAL : hal-01615151.