Guillaume Beslon
Professor
Team(s) | Beagle |
Institution | Institut National des Sciences Appliquées de Lyon |
Location | CEI (INRIA) |
guillaume.beslon at liris.cnrs.fr | |
Professional phone number | |
Personal page |
Publications (IdHAL : gbeslon)
Publications LIRIS pour Guillaume Beslon (142)
- 2027 (1)
- Conferences (1)
- International conferences with peer review (1)
- Hugo Daudey, David Parsons, Eric Tannier, Vincent Daubin, Bastien Boussau, Vincent Liard, Romain Gallé, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2027). "Aevol 4b: Bridging the gap between artificial life and bioinformatics". International Conference for Artificial Life (ALIFE ISAL 2024), - 26 juillet 2027, Copenhague (Denmark), pp. 41-49. HAL : hal-04667220. .
- 2024 (1)
- Others (1)
- Théotime Grohens, Sam Meyer & Guillaume Beslon (2024). "Emergence of Supercoiling-Mediated Regulatory Networks through Bacterial Chromosome Organization". doi : 10.1101/2022.09.23.509185. HAL : hal-04398893. .
- 2023 (3)
- Journals (1)
- International journals with peer review (1)
- Paul Banse, Juliette Luiselli, David Parsons, Théotime Grohens, Marco Foley, Leonardo Trujillo, Jonathan Rouzaud‐Cornabas, Carole Knibbe & Guillaume Beslon (2023). "Forward‐in‐time simulation of chromosomal rearrangements: The invisible backbone that sustains long‐term adaptation". Molecular Ecology. doi : 10.1111/mec.17234. HAL : hal-04350147. .
- Conferences (1)
- International conferences with peer review (1)
- Reza Kalhor, Guillaume Beslon, Manuel Lafond & Celine Scornavacca (2023). "Classifying the Post-duplication Fate of Paralogous Genes". RECOMB-CG 2023 - 20th conference on Comparative Genomics, 15 avril 2023, Istanbul (Turkey), pp. 1-18. doi : 10.1007/978-3-031-36911-7_1. HAL : hal-04239853. .
- Others (1)
- Marco Foley, Jonathan Rouzaud-Cornabas, Eric Tannier & Guillaume Beslon (2023). "Towards alife-generated benchmarks for phylogeny". ALignements and PHYlogénie (Alphy), 25 janvier 2023, Grenoble (France). Poster. HAL : hal-04398854.
- 2022 (7)
- Journals (3)
- International journals with peer review (3)
- Leonardo Trujillo, Paul Banse & Guillaume Beslon (2022). "Getting higher on rugged landscapes: Inversion mutations open access to fitter adaptive peaks in NK fitness landscapes". PLoS Computational Biology, vol. 18, #10, e1010647. doi : 10.1371/journal.pcbi.1010647. ArXiv : arXiv:2210.06804. HAL : hal-03866346. .
- Théotime Grohens, Sam Meyer & Guillaume Beslon (2022). "A Genome-Wide Evolutionary Simulation of the Transcription-Supercoiling Coupling". Artificial Life. doi : 10.1162/artl_a_00373. HAL : hal-03912118. .
- Miguel A. Fortuna, Guillaume Beslon & Charles Ofria (2022). "Digital evolution: Insights for biologists". Frontiers in Ecology and Evolution. doi : 10.3389/fevo.2022.1037040. HAL : hal-03912093. .
- Others (4)
- François Smekens, Nicolas Freud, Bruno Sixou, Guillaume Beslon & Jean Michel Létang (2022). "Towards the optimization of ballistics in proton therapy using genetic algorithms: implementation issues". ArXiv : 2205.08283. HAL : hal-03702837.
- Théotime Grohens, Sam Meyer & Guillaume Beslon (2022). "A Genome-Wide Evolutionary Simulation of the Transcription-Supercoiling Coupling: extended version". HAL : hal-03667822. .
- François Smekens, Nicolas Freud, Bruno Sixou, Guillaume Beslon & Jean Michel Létang (2022). "Variable length genetic algorithm with continuous parameters optimization of beam layout in proton therapy". ArXiv : 2205.08398. HAL : hal-03702842.
- Leonardo Trujillo, Paul Banse & Guillaume Beslon (2022). "Inversion mutations attenuate complexity catastrophe in NK fitness landscapes". HAL : hal-04096866. .
- 2021 (5)
- Conferences (3)
- International conferences with peer review (3)
- Théotime Grohens, Sam Meyer & Guillaume Beslon (2021). "A Genome-Wide Evolutionary Simulation of the Transcription-Supercoiling Coupling". ALIFE 2021 - Conference on Artificial Life, 23 juillet 2021, Prague (Czech Republic). HAL : hal-03242696. .
- Leonardo Trujillo, Paul Banse & Guillaume Beslon (2021). "Simulating short-and long-term evolutionary dynamics on rugged landscapes". ALIFE 2021 - Conference on Artificial Life, 23 juillet 2021, Prague (Czech Republic), pp. 1-9. ArXiv : 2105.05520. HAL : hal-03426019. .
- Guillaume Beslon, Vincent Liard & Jonathan Rouzaud-Cornabas (2021). "The Complexity Ratchet". CCS 2021 - International Conference on Complex Systems, 29 octobre 2021, Lyon (France). HAL : hal-03511442. .
- Book edition (books, chapters, seminars, congress, special numbers) (1)
- Guillaume Beslon, Vincent Liard, David P. Parsons & Jonathan Rouzaud-Cornabas (2021). "Of Evolution, Systems and Complexity". Evolutionary Systems Biology II. doi : 10.1007/978-3-030-71737-7_1. HAL : hal-03136122. .
- Others (1)
- Leonardo Trujillo, Paul Banse & Guillaume Beslon (2021). "Evolutionary escape from local fitness peaks through inversion mutations". CCS 2021 - Conference on Complex Systems. HAL : hal-03426022. .
- 2020 (4)
- Journals (4)
- International journals with peer review (4)
- Sergio Peignier, Christophe Rigotti & Guillaume Beslon (2020). "Evolutionary Subspace Clustering Using Variable Genome Length". Computational Intelligence, vol. 36, #2, pp. 574-612. doi : 10.1111/coin.12254. HAL : hal-02405598. .
- Charles Rocabert, Guillaume Beslon, Carole Knibbe & Samuel Bernard (2020). "Phenotypic noise and the cost of complexity". Evolution - International Journal of Organic Evolution. doi : 10.1111/evo.14083. HAL : hal-02920356. .
- Joel Lehman, Jeff Clune, Dusan Misevic, Christoph Adami, Julie Beaulieu, Peter J. Bentley, Samuel Bernard, Guillaume Beslon, David M. Bryson et al. (2020). "The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities". Artificial Life, vol. 26, #2, pp. 274-306. doi : 10.1162/artl_a_00319. ArXiv : 1803.03453. HAL : hal-01735473. .
- Vincent Liard, David Parsons, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2020). "The complexity ratchet: Stronger than selection, stronger than evolvability, weaker than robustness". Artificial Life, vol. 26, #1, pp. 38-57. doi : 10.1162/artl_a_00312. HAL : hal-03136077. .
- 2019 (4)
- Journals (2)
- International journals with peer review (2)
- Carole Knibbe, Guillaume Beslon & Dusan Misevic (2019). "Introduction to the ECAL 2017 Special Issue". Artificial Life, vol. 25, #4, pp. 313-314. doi : 10.1162/artl_a_00298. HAL : hal-02428658. .
- Jacob Rutten, Paulien Hogeweg & Guillaume Beslon (2019). "Adapting the engine to the fuel: mutator populations can reduce the mutational load by reorganizing their genome structure". BMC Evolutionary Biology, vol. 19, #1, pp. 1-17. doi : 10.1186/s12862-019-1507-z. HAL : hal-02350040. .
- Conferences (1)
- International conferences with peer review (1)
- Quentin Carde, Marco Foley, Carole Knibbe, David Parsons, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2019). "How to reduce a genome? ALife as a tool to teach the scientific method to school pupils". ALIFE 2019 - Conference on Artificial Life, 2 août 2019, Newcastle (United Kingdom), pp. 497-504. doi : 10.1162/isal_a_00211. HAL : hal-02285718. .
- Others (1)
- Charles Rocabert, Guillaume Beslon, Carole Knibbe & Samuel Bernard (2019). "Phenotypic Noise and the Cost of Complexity". EvoLyon 2019, 26 novembre 2019, Lyon (France). Poster. HAL : hal-02402443. .
- 2018 (6)
- Conferences (3)
- International conferences with peer review (3)
- Sergio Peignier, Christophe Rigotti, Anthony Rossi & Guillaume Beslon (2018). "Weight-based search to find clusters around medians in subspaces". SAC 2018 - ACM Symposium On Applied Computing, 13 avril 2018, Pau (France), pp. 1-10. HAL : hal-01869974. .
- Guillaume Beslon, Santiago Elena, Paulien Hogeweg, Dominique Schneider & Susan Stepney (2018). "Evolving Living Technologies-Insights from the EvoEvo project". SSBSE 2018 - 10th Symposium on Search-Based Software Engineering, 9 septembre 2018, Montpellier (France), pp. 46-62. doi : 10.1007/978-3-319-99241-9_2. HAL : hal-01882636. .
- Vincent Liard, David Parsons, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2018). "The Complexity Ratchet: Stronger than selection, weaker than robustness". ALIFE 2018 - the 2018 conference on artificial Life, 27 juillet 2018, Tokyo (Japan), pp. 1-8. doi : 10.1162/isal_a_00051. HAL : hal-01882628. .
- Others (3)
- Guillaume Beslon, Vincent Liard & Santiago Elena (2018). "Jump then Climb: can rearrangements predict the occurrence of mutational bursts?". Evolution 2018 - Congress on Evolutionary Biology, 22 août 2018, Montpellier (France). Poster. HAL : hal-01938800. .
- Vincent Liard, Jonathan Rouzaud-Cornabas, David Parsons & Guillaume Beslon (2018). "The complexity ratchet: stronger than selection". Beacon congress 2018, 11 août 2018, east-lansing (United States of America). Poster. HAL : hal-01938802. .
- Guillaume Beslon, Vincent Liard, David P. Parsons & Jonathan Rouzaud-Cornabas (2018). "In silico experimental evolution shows that complexity can rise even in simple environments". ICSB 2018 - 19th International Conference on Systems Biology, 1 novembre 2018, Lyon (France). Poster. HAL : hal-01939365. .
- 2017 (8)
- Journals (3)
- International journals with peer review (3)
- Guillaume Beslon & Dominique Schneider (2017). "Isee-resistance : using in silico experimental evolution to sensitize providers on antibiotic resistance". Antimicrobial Resistance and Infection Control, vol. 6Suppl 3, #52, p. 2. HAL : hal-01569262.
- Jonas Abernot, Guillaume Beslon, Simon Hickinbotham, Sergio Peignier & Christophe Rigotti (2017). "Evolving Instrument Based on Symbiont-Host Metaphor: a Commensal Computation". Journal of Creative Music Systems, vol. 2, #1, pp. 1-10. doi : 10.5920/JCMS.2017.11. HAL : hal-01596573. .
- Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider & Guillaume Beslon (2017). "Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification". PLoS Computational Biology, vol. 13, #3, e1005459 (32 pages. doi : 10.1371/journal.pcbi.1005459.s006. HAL : hal-01508751. .
- Conferences (4)
- International conferences with peer review (3)
- Vincent Liard, Jonathan Rouzaud-Cornabas, Nicolas Comte & Guillaume Beslon (2017). "A 4-base model for the Aevol in-silico experimental evolution platform". European Conference on Artificial Life, 8 septembre 2017, Villeurbanne (France). HAL : hal-01569097. .
- Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider & Guillaume Beslon (2017). "Environmental seasonality drives digital populations towards stable cross-feeding". European Conference on Artificial Life (ECAL), 8 septembre 2017, Villeurbanne (France). HAL : hal-01569093. .
- Sergio Peignier, Jonas Abernot, Christophe Rigotti & Guillaume Beslon (2017). "EvoMove: Evolutionary-based living musical companion". European Conference on Artificial Life (ECAL), 8 septembre 2017, Villeurbanne (France), pp. 1-8. HAL : hal-01569091. .
- National conferences with peer review (1)
- Nicolas Comte, Vincent Liard, Carole Knibbe & Guillaume Beslon (2017). "Aevol-4b: Toward a new simulation platform to benchmark phylogenetic tools". ALPHY (ALignments and PHYlogeny), 2 février 2017, Villeurbanne (France). HAL : hal-01569078. .
- Others (1)
- Guillaume Beslon, Vincent Liard & Santiago F Elena (2017). "Testing evolution predictability using the aevol software". 16th international meeting of the European Society of Evolutionary Biology (ESEB 2017), 25 août 2017, Groningen (Netherlands). Poster. HAL : hal-01577115. .
- 2016 (25)
- Journals (2)
- International journals with peer review (2)
- Tim Taylor, Mark Bedau, Alastair Channon, David Ackley, Wolfgang Banzhaf, Guillaume Beslon, Emily Dolson, Tom Froese, Simon Hickinbotham et al. (2016). "Open-Ended Evolution: Perspectives from the OEE Workshop in York". Artificial Life, vol. 22, #3, pp. 408-423. doi : 10.1162/ARTL_a_00210. HAL : hal-01371116. .
- Wolfgang Banzhaf, Bert Baumgaertner, Guillaume Beslon, René Doursat, James A Foster, Barry Mcmullin, Vinicius Veloso De Melo, Thomas Miconi, Lee Spector et al. (2016). "Defining and simulating open-ended novelty: requirements, guidelines, and challenges.". Theorie in den Biowissenschaften / Theory in Biosciences. doi : 10.1007/s12064-016-0229-7. HAL : hal-01323108.
- Conferences (8)
- International conferences with peer review (7)
- Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider & Guillaume Beslon (2016). "In Silico Experimental Evolution Highlights the Influence of Environmental Seasonality on Bacterial Diversification". 2nd EvoEvo Workshop, satellite workshop of CCS2016, 20 septembre 2016, Amsterdam (Netherlands). HAL : hal-01375677. .
- Yoram Vadée-Le-Brun, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2016). "In Silico Experimental Evolution suggests a complex intertwining of selection, robustness and drift in the evolution of genetic networks complexity". Artificial Life, 8 juillet 2016, Cancun (Mexico). HAL : hal-01375645. .
- Jonas Abernot, Guillaume Beslon, Simon Hickinbotham, Sergio Peignier & Christophe Rigotti (2016). "A Commensal Architecture for Evolving Living Instruments". Conference on Computer Simulation of Musical Creativity, 19 juin 2016, Huddersfield (United Kingdom), pp. 1-8. HAL : hal-01368034.
- Priscila Biller, Carole Knibbe, Guillaume Beslon & Eric Tannier (2016). "Comparative Genomics on Artificial Life". Computability in Europe, 27 juin 2016, Paris (France), pp. 35-44. HAL : hal-01334930.
- Guillaume Beslon, Vincent Liard & Santiago Elena (2016). "Evolvability drives innovation in viral genomes". 2nd EvoEvo Workshop, satellite workshop of CCS2016, 20 septembre 2016, Amsterdam (France). HAL : hal-01375665. .
- Jacob Rutten, Paulien Hogeweg & Guillaume Beslon (2016). "Evolution of mutator populations in constant environments". 2nd EvoEvo Workshop, satellite workshop of CCS2016, 20 septembre 2016, Amsterdam (Netherlands). HAL : hal-01375669. .
- Susan Stepney & Guillaume Beslon (2016). "Open-Endedness: Definitions and Shortcuts". 2nd EvoEvo Workshop, satellite workshop of CCS2016, 20 septembre 2016, Amsterdam (Netherlands). HAL : hal-01375671. .
- National conferences with peer review (1)
- Priscila Biller, Eric Tannier, Guillaume Beslon & Carole Knibbe (2016). "In silico experimental evolution provides independent and challenging benchmarks for comparative genomics". Journées ouvertes Biologie Informatique Mathématiques, 30 juin 2016, Lyon (France), pp. 79-82. HAL : hal-01375657. .
- Reports (14)
- Research reports/tecnical reports (14)
- Paulien Hogeweg, Guillaume Beslon & Susan Stepney (2016). "EvoEvo Deliverable 3.4". Research report. HAL : hal-01577160. .
- Paulien Hogeweg & Guillaume Beslon (2016). "EvoEvo Deliverable 3.3". Research report. HAL : hal-01577156. .
- Paulien Hogeweg & Guillaume Beslon (2016). "EvoEvo Deliverable 3.2". Research report. HAL : hal-01577155. .
- Paulien Hogeweg & Guillaume Beslon (2016). "EvoEvo Deliverable 3.1". Research report. HAL : hal-01577153. .
- Santiago F. Elena, Guillaume Beslon, Otmane Lamrabet & Dominique Schneider (2016). "EvoEvo Deliverable 1.3". Research report. HAL : hal-01577127. .
- Dominique Schneider, Guillaume Beslon, Santiago F. Elena & Otmane Lamrabet (2016). "EvoEvo Deliverable 1.6". Research report. HAL : hal-01577131. .
- Dominique Schneider, Guillaume Beslon, José-Luis Carrasco, Santiago F. Elena, Otmane Lamrabet & A. Willemsen (2016). "EvoEvo Deliverable 1.5". Research report. HAL : hal-01577130. .
- Santiago F. Elena, Guillaume Beslon, Otmane Lamrabet & Dominique Schneider (2016). "EvoEvo Deliverable 1.4". Research report. HAL : hal-01577128. .
- Susan Stepney, Guillaume Beslon & Tim Hoverd (2016). "EvoEvo Deliverable 4.3". Research report. HAL : hal-01577166. .
- Santiago F. Elena, Dominique Schneider, Guillaume Beslon & Otmane Lamrabet (2016). "EvoEvo Deliverable 1.2". Research report. HAL : hal-01577126. .
- Guillaume Beslon, Jonas Abernot, Sergio Peignier & Christophe Rigotti (2016). "EvoEvo Deliverable 5.1". Research report. HAL : hal-01577177. .
- Guillaume Beslon & Paulien Hogeweg (2016). "EvoEvo Deliverable 6.6". Research report. HAL : hal-01577185. .
- Guillaume Beslon, Jonas Abernot, Sergio Peignier & Christophe Rigotti (2016). "EvoEvo Deliverable 5.2". Research report. HAL : hal-01577180. .
- Guillaume Beslon, Jonas Abernot, Santiago F. Elena, Dominique Schneider, Paulien Hogeweg, Susan Stepney & Christophe Rigotti (2016). "EvoEvo Deliverable 6.8". Research report. HAL : hal-01577187. .
- Others (1)
- Bérénice Batut, Guillaume Beslon & Carole Knibbe (2016). "Unexpected genome inflation and streamlining in variable environments". Journées ouvertes de Biologie Informatique & Mathématiques 2016, 30 juin 2016, Lyon (France). Poster. HAL : hal-01375653.
- 2015 (11)
- Journals (1)
- International journals with peer review (1)
- Ophélie Arnaud, Sam Meyer, Elodie Vallin, Guillaume Beslon & Olivier Gandrillon (2015). "Temperature-induced variation in gene expression burst size in metazoan cells". BMC Molecular Biology. doi : 10.1186/s12867-015-0048-2. HAL : hal-01248384.
- Conferences (4)
- International conferences with peer review (4)
- Sergio Peignier, Christophe Rigotti & Guillaume Beslon (2015). "Subspace Clustering for all Seasons". EvoEvo Workshop (satellite workshop of ECAL 2015), 24 juillet 2015, york (United Kingdom), pp. 1-3. HAL : hal-01252793. .
- Yoram Vadée-Le-Brun, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2015). "Epigenetic inheritance speeds up evolution of artificial organisms". European Conference on Artificial Life, York (United Kingdom). doi : 10.7551/978-0-262-33027-5-ch078. HAL : hal-01248383. .
- Charles Rocabert, Carole Knibbe & Guillaume Beslon (2015). "Towards a Integrated Evolutionary Model to Study Evolution of Evolution". EvoEvo Workshop (Satellite workshop of ECAL 2015), 24 juillet 2015, York (United Kingdom). HAL : hal-01252796. .
- Sergio Peignier, Christophe Rigotti & Guillaume Beslon (2015). "Subspace Clustering Using Evolvable Genome Structure". Genetic and Evolutionary Computation Conference (GECCO), 11 juillet 2015, Madrid (Spain), pp. 575-582. HAL : hal-01199136.
- Reports (6)
- Research reports/tecnical reports (6)
- Guillaume Beslon & Charles Rocabert (2015). "EvoEvo Deliverable 2.7". Research report. HAL : hal-01577147. .
- Guillaume Beslon & Charles Rocabert (2015). "EvoEvo Deliverable 2.6". Research report. HAL : hal-01577144. .
- Guillaume Beslon & Charles Rocabert (2015). "EvoEvo Deliverable 2.8". Research report. HAL : hal-01577149. .
- Guillaume Beslon, Santiago F. Elena, Paulien Hogeweg, Dominique Schneider & Susan Stepney (2015). "EvoEvo Deliverable 6.5". Research report. HAL : hal-01577184. .
- Guillaume Beslon & Charles Rocabert (2015). "EvoEvo Deliverable 2.4". Research report. HAL : hal-01577140. .
- Guillaume Beslon & Charles Rocabert (2015). "EvoEvo Deliverable 2.2". Research report. HAL : hal-01577135. .
- 2014 (10)
- Journals (4)
- International journals with peer review (4)
- Hédi Soula, Bertrand Caré, Guillaume Beslon & Hugues Berry (2014). "Comments to the Editor. Reply to the Comment by V.P. Shkilev on "Anomalous versus slowed-down Brownian diffusion in the ligand-binding equilibrium"". Biophysical Journal, vol. 106, #11, pp. 2544-2546. doi : 10.1016/j.bpj.2014.03.052. HAL : hal-00956603. .
- Guillaume Corre, Daniel Stockholm, Ophélie Arnaud, Gaël Kaneko, José Viñuelas, Yoshiaki Yamagata, Thi My Anh Neildez-Nguyen, Jean-Jacques Kupiec, Guillaume Beslon et al. (2014). "Stochastic Fluctuations and Distributed Control of Gene Expression Impact Cellular Memory". PLoS ONE, vol. 9, #12, e115574. doi : 10.1371/journal.pone.0115574. HAL : hal-01370311. .
- Stephan Fischer, Samuel Bernard, Guillaume Beslon & Carole Knibbe (2014). "A Model for Genome Size Evolution". Bulletin of Mathematical Biology, vol. 76, #9, pp. 2249-2291. doi : 10.1007/s11538-014-9997-8. HAL : hal-01090984. .
- Sam Meyer & Guillaume Beslon (2014). "Torsion-Mediated Interaction between Adjacent Genes". PLoS Computational Biology, vol. 10, #9, e1003785. doi : 10.1371/journal.pcbi.1003785. HAL : hal-01090990. .
- Reports (6)
- Research reports/tecnical reports (6)
- Guillaume Beslon, Santiago F. Elena & Dominique Schneider (2014). "EvoEvo Deliverable 6.2". Research report. HAL : hal-01577183. .
- Guillaume Beslon (2014). "EvoEvo Deliverable 6.1". Research report. HAL : hal-01577182. .
- Guillaume Beslon, Paulien Hogeweg, Carole Knibbe, Charles Rocabert & Susan Stepney (2014). "EvoEvo Deliverable 2.3". Research report. HAL : hal-01577138. .
- Dominique Schneider, Guillaume Beslon, Santiago F. Elena & Otmane Lamrabet (2014). "EvoEvo Deliverable 1.1". Research report. HAL : hal-01577124. .
- Guillaume Beslon, Paul Andrews, Carole Knibbe & Charles Rocabert (2014). "EvoEvo Deliverable 2.1". Research report. HAL : hal-01577134. .
- Guillaume Beslon, Carole Knibbe & Charles Rocabert (2014). "EvoEvo Deliverable 2.5". Research report. HAL : hal-01577142. .
- 2013 (5)
- Journals (3)
- International journals with peer review (3)
- Bérénice Batut, David P. Parsons, Stephan Fischer, Guillaume Beslon & Carole Knibbe (2013). "In silico experimental evolution: a tool to test evolutionary scenarios". BMC Bioinformatics, vol. 14, Suppl 15, S11. HAL : hal-00873232. .
- Hédi Soula, Bertrand Caré, Guillaume Beslon & Hugues Berry (2013). "Anomalous versus slowed-down Brownian diffusion in the ligand-binding equilibrium". Biophysical Journal, vol. 105, #9, pp. 2064-2073. doi : 10.1016/j.bpj.2013.07.023. ArXiv : 1207.5725. HAL : hal-00720515. .
- José Viñuelas, Gaël Kaneko, Antoine Coulon, Elodie Vallin, Valérie Morin, Camila Mejia-Pous, Jean-Jacques Kupiec, Guillaume Beslon & Olivier Gandrillon (2013). "Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts.". BMC Biology, vol. 11, #1, p. 15. doi : 10.1186/1741-7007-11-15. HAL : inserm-00817963. .
- Conferences (1)
- International conferences with peer review (1)
- Guillaume Beslon, Bérénice Batut, David P. Parsons, Dominique Schneider & Carole Knibbe (2013). "An alife game to teach evolution of antibiotic resistance". ECAL - 12th European Conference on Artificial Life - 2013, 6 septembre 2013, Taormina (Italy), pp. 43-50. HAL : hal-00849345.
- Book edition (books, chapters, seminars, congress, special numbers) (1)
- Hugues Berry & Guillaume Beslon (2013). "De la modélisation comme poésie. La modélisation de systèmes biologiques complexes vue par deux modélisateurs". Modéliser & simuler. Epistémologies et pratiques de la modélisation et de la simulation, Franck Varenne and Marc Silberstein, Editions Matériologiques, Paris. HAL : hal-00815550.
- 2012 (7)
- Journals (5)
- International journals with peer review (5)
- José Viñuelas, Gaël Kaneko, Antoine Coulon, Guillaume Beslon & Olivier Gandrillon (2012). "Towards experimental manipulation of stochasticity in gene expression.". Progress in Biophysics and Molecular Biology, vol. 100, #1, epub ahead of print. doi : 10.1016/j.pbiomolbio.2012.04.010. HAL : hal-00720054.
- Hédi Soula, Antoine Coulon & Guillaume Beslon (2012). "Membrane microdomains emergence through non-homogeneous diffusion.". BMC Biophysics, vol. 5, #1, p. 6. doi : 10.1186/2046-1682-5-6. HAL : inserm-00768564. .
- Thomas Hindré, Carole Knibbe, Guillaume Beslon & Dominique Schneider (2012). "New insights into bacterial adaptation through in vivo and in silico experimental evolution". Nature Reviews Microbiology, vol. 10, #5, pp. 352-365. doi : 10.1038/nrmicro2750. HAL : hal-00696231.
- Sebastian Grauwin, Guillaume Beslon, Eric Fleury, Sara Franceschelli, Céline Robardet, Jean-Baptiste Rouquier & Pablo Jensen (2012). "Complex Systems Science: Dreams of Universality, Reality of Interdisciplinarity". Journal of the American Society for Information Science and Technology, vol. 63, #7, 10.1002/asi.22644. doi : 10.1002/asi.22644. ArXiv : 1206.2216. HAL : hal-00706567. .
- Olivier Gandrillon, Delphine Kolesnik-Antoine, Jean-Jacques Kupiec & Guillaume Beslon (2012). "Chance at the heart of the cell". Progress in Biophysics and Molecular Biology, vol. 110, #1, pp. 1-4. doi : 10.1016/j.pbiomolbio.2012.05.006. HAL : hal-00720052.
- Conferences (1)
- International conferences with peer review (1)
- David Parsons, Carole Knibbe & Guillaume Beslon (2012). "The Paradoxical Effects of Allelic Recombination on Fitness". Proceedings of Artificial Life XIII, 22 juillet 2012, East Lansing (France), pp. 536-537. HAL : hal-00759142.
- Others (1)
- Bérénice Batut, Mathilde Dumond, Gabriel Marais, Guillaume Beslon & Carole Knibbe (2012). "Simulating evolutionary scenarios to test whether they can induce reductive evolution". SMBE 2012 : Society for Molecular Biology and Evolution, 26 juin 2012, Dublin (Ireland). Poster. HAL : hal-00762597.
- 2011 (7)
- Journals (3)
- International journals with peer review (2)
- Antoine Coulon, Guillaume Beslon & Hédi Soula (2011). "Enhanced Stimulus Encoding Capabilities with Spectral Selectivity in Inhibitory Circuits by STDP". Neural Computation, vol. 23, #4, pp. 882-908. HAL : inria-00593704.
- Vic Norris, Abdallah Zemirline, Patrick Amar, Jean Nicolas Audinot, Pascal Ballet, Eshel Ben-Jacob, Gilles Bernot, Guillaume Beslon, Armelle Cabin et al. (2011). "Computing with bacterial constituents, cells and populations: from bioputing to bactoputing". Theorie in den Biowissenschaften / Theory in Biosciences, vol. 130, #3, pp. 211-228. doi : 10.1007/s12064-010-0118-4. HAL : hal-00643738.
- National journals with peer review (1)
- Eric Bertin, Guillaume Beslon, Olivier Gandrillon, Sebastian Grauwin, Pablo Jensen & Nicolas Schabanel (2011). "Les complexités : point de vue d'un institut des systèmes complexes". Hermès, La Revue - Cognition, communication, politique, vol. 2, #60, pp. 145-150. doi : 10.4267/2042/45459. HAL : hal-00744520.
- Conferences (2)
- International conferences with peer review (2)
- David Parsons, Carole Knibbe & Guillaume Beslon (2011). "Homologous and Nonhomologous Rearrangements: Interactions and Effects on Evolvability.". Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), 8 août 2011, Paris (France), pp. 622-629. HAL : hal-00696902.
- Carole Knibbe, David P. Parsons & Guillaume Beslon (2011). "Parsimonious modeling of scaling laws in genomes and transcriptomes". Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), 8 août 2011, Paris (France), pp. 414-415. HAL : hal-00696870.
- Others (2)
- François Smekens, Jean-Michel Létang, Nicolas Freud, Bruno Sixou & Guillaume Beslon (2011). "Optimization of proton therapy ballistics using a genetic algorithm". Particle Therapy Co-Operative Group, PTCOG, 8 mai 2011, Philadelphia (US) (United States of America). Poster. HAL : hal-01354428.
- José Viñuelas, Gaël Kaneko, Valérie Morin, Elodie Vallin, Antoine Coulon, Camila Meijia-Pous, Guillaume Beslon & Olivier Gandrillon (2011). "Chromatin is a major player in regulating gene expression stochasticity in higher eukaryotic cells". Stochastic Systems Biology conference, 19 juillet 2011, Ascona (Switzerland). Poster. HAL : hal-01354566.
- 2010 (8)
- Journals (4)
- International journals with peer review (3)
- Antoine Coulon, Olivier Gandrillon & Guillaume Beslon (2010). "On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter.". BMC Systems Biology, vol. 4, p. 2. doi : 10.1186/1752-0509-4-2. HAL : hal-00542455. .
- Guillaume Beslon, David Parsons, Yolanda Sanchez-Dehesa, Jose-Maria Peña & Carole Knibbe (2010). "Scaling Laws in Bacterial Genomes: A Side-Effect of Selection of Mutational Robustness". BioSystems, vol. 102, #1, pp. 32-40. doi : 10.1016/j.biosystems.2010.07.009. HAL : inria-00593709.
- Guillaume Beslon, David P. Parsons, Jose-Maria Pena, Christophe Rigotti & Yolanda Sanchez-Dehesa (2010). "From Digital Genetics to Knowledge Discovery: Perspectives in Genetic Network Understanding". Intelligent Data Analysis, vol. 14, #2, pp. 173-191. doi : 10.3233/IDA-2010-0415. HAL : hal-00697024.
- Other journals (1)
- Guillaume Beslon & Joanna Jongwane (2010). "À propos de la validité des modèles". Interstices. HAL : hal-01350237.
- Conferences (4)
- International conferences with peer review (1)
- David P. Parsons, Carole Knibbe & Guillaume Beslon (2010). "Importance of the rearrangement rates on the organization of transcription.". Proceedings of Artificial Life XII, 19 août 2010, Odense (Denmark), pp. 479-486. HAL : hal-00697043.
- National conferences with peer review (3)
- David P. Parsons, Carole Knibbe & Guillaume Beslon (2010). "Aevol : un modèle individu-centré pour l’étude de la structuration des génomes". MajecSTIC, 13 octobre 2010, Bordeaux (France), inconnue. HAL : hal-01381560.
- David P. Parsons, Carole Knibbe & Guillaume Beslon (2010). "Influence of the rearrangement rates on the organization of genome transcription". JOBIM, 7 juin 2010, Montpellier (France), inconnue. HAL : hal-01381518.
- David P. Parsons, Carole Knibbe & Guillaume Beslon (2010). "Influence of the rearrangement rates on the organization of genome transcription". Integrative Post-Genomics, 25 novembre 2010, Lyon (France), inconnue. HAL : hal-01381618.
- 2009 (4)
- Conferences (2)
- International conferences with peer review (1)
- Guillaume Beslon, Yolanda Sanchez-Dehesa, David P. Parsons, Jose Maria Pena & Carole Knibbe (2009). "Scaling Laws in Digital Organisms". Proc. Information Processing in Cells and Tissues IPCAT'09, 5 avril 2009, Ascona (Switzerland), pp. 111-114. HAL : hal-01437632.
- National conferences with peer review (1)
- David P. Parsons, Guillaume Beslon, Carole Knibbe, Yolanda Sanchez-Dehesa & Jose Maria Pena (2009). "Evolution of scaling laws in artificial regulation networks". Integrative Post-Genomics, 18 novembre 2009, Lyon (France), pp. 22-22. HAL : hal-01437814.
- Book edition (books, chapters, seminars, congress, special numbers) (1)
- Antoine Coulon, Guillaume Beslon, François Chatelain, Alexandra Fuchs, Olivier Gandrillon, M Gineste, Jean-Jacques Kupiec, Camila Mejia-Perez & Andras Paldi (2009). "Mécanismes moléculaires et fonction biologique de la variabilité de l'expression génique à l'échelle de la cellule unique : une approche systémique". Le Hasard au coeur de la cellule, Syllepse edition, pp. 82-111. doi : 10.3917/edmat.kupie.2011.01.0082. HAL : hal-01499539.
- Others (1)
- José Viñuelas, Gaël Kaneko, Antoine Coulon, Guillaume Beslon & Olivier Gandrillon (2009). "Relationship between chromosomal features and gene expression stochasticity in higher eukaryotic cells". Integrative Post-Genomics, 18 novembre 2009, Lyon (France). Poster. HAL : hal-01437813.
- 2008 (13)
- Journals (4)
- International journals with peer review (2)
- Christophe Lavelle, Hugues Berry, Guillaume Beslon, Francisco Ginelli, Jean-Louis Giavitto, Zoï Kapoula, André Le Bivic, Nadine Peyriéras, Ovidiu Radulescu et al. (2008). "From Molecules to Organisms: Towards Multiscale Integrated Models of Biological Systems". Theoretical Biology Insights, vol. 1, pp. 13-22. HAL : inria-00331281.
- Yolanda Sanchez-Dehesa, David P. Parsons, Jose Maria Pena & Guillaume Beslon (2008). "Modelling Evolution of Regulatory Networks in Artificial Bacteria". Mathematical Modelling of Natural Phenomena, vol. 3, pp. 27-66. doi : 10.1051/mmnp:2008054. HAL : hal-01500393. .
- National journals with peer review (2)
- Antoine Coulon, Guillaume Beslon & Olivier Gandrillon (2008). "Large multiprotein structures modeling and simulation: the need for mesoscopic models.". Methods in Molecular Biology, vol. 484, pp. 537-58. doi : 10.1007/978-1-59745-398-1_32. HAL : hal-00294029.
- C. Knibbe, J. M. Fayard & Guillaume Beslon (2008). "The topology of the protein network influences the dynamics of gene order: from systems biology to a systemic understanding of evolution". Artificial Life, vol. 14, #1, pp. 149-156. doi : 10.1162/artl.2008.14.1.149. HAL : hal-00391448.
- Conferences (6)
- International conferences with peer review (1)
- Guillaume Beslon, Federica Calevro, Hubert Charles, Jean-Michel Fayard, Carole Knibbe, Stéphane Génieys & Marie-France Sagot (2008). "Evolution des organismes bactériens". Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant", Villeurbanne (France), 12 diapos. HAL : hal-02822501.
- National conferences with peer review (5)
- Guillaume Beslon (2008). "Evolution of genome structure : a computational approach". Workshop “Evolutionary Dynamics”, Utrecht (Netherlands). HAL : hal-01615228.
- Victor Norris, Abdallah Zemirline, Patrick Amar, Pascal Ballet, Eshel Ben Jacob, Gilles Bernot, Guillaume Beslon, Eric Fanchon, Jean-Louis Giavitto et al. (2008). "From bioputing to bactoputing: computing with bacteria". Lille Spring School on Modelling Complex Biological Systems in the Context of Genomics, 11 avril 2008, Paris (France), pp. 123-150. HAL : hal-00340470. .
- Guillaume Beslon, Sara Franceschelli & Carole Knibbe (2008). "Petits bricolages en évolution". "Génies de la Bricole et du Bricolage", colloque en hommage à Claude Levy-Strauss, 28 novembre 2008, Lyon (France). HAL : hal-01614309.
- Virginie Lefort & Guillaume Beslon (2008). "Optimisation incrémentale de réseaux de neurones RBF pour la régression via un algorithme évolutionnaire : RBF-Gene". Actes 8° Journées Francophones Extraction et Gestion des Connaissances EGC'08, 1 février 2008, Sophia-Antipolis (France), pp. 331-336. HAL : hal-01614293.
- Guillaume Beslon, Yolanda Sanchez-Dehesa & Jose Maria Pena (2008). "Modeling evolution of genetic regulation in artificial bacteria". European Conference on Complex Systems, 19 septembre 2008, Jérusalem (Israel), p. 4. HAL : hal-01614302.
- HDR, thesis (1)
- HDR (1)
- Guillaume Beslon (2008). "Apprivoiser la vie". HAL : hal-01470048.
- Others (2)
- Hédi Soula & Guillaume Beslon (2008). "Modeling membrane micro-domain formation through inhomogeneous diffusion". Integrative Post-Genomics, IPG'08, 21 novembre 2008, Lyon (France). Poster. HAL : hal-01614515.
- Antoine Coulon, Olivier Gandrillon & Guillaume Beslon (2008). "Gene expression and the dynamics of transcriptional regulation : a model for theoretical and experimental investigations". Integrative Post-Genomics, IPG'08, 21 novembre 2008, Lyon (France). Poster. HAL : hal-01614314.
- 2007 (10)
- Journals (1)
- National journals with peer review (1)
- Antoine Coulon, Hédi Soula, Olivier Mazet, Olivier Gandrillon & Guillaume Beslon (2007). "Modélisation cellulaire pour l'émergence de structures multiprotéiques auto-organisées". Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, vol. 26, pp. 123-148. doi : 10.3166/tsi.26.123-148. HAL : hal-01613745.
- Conferences (8)
- International conferences with peer review (4)
- Yolanda Sanchez-Dehesa, Loïc Cerf, Jose Maria Pena, Jean-François Boulicaut & Guillaume Beslon (2007). "Artificial Regulatory Networks Evolution". Proc 1st Int Workshop on Machine Learning for Systems Biology MLSB 07, 25 septembre 2007, Evry (France), pp. 47-52. HAL : hal-01502737. .
- Gaël Kaneko, Carole Knibbe & Guillaume Beslon (2007). "Effect of bottlenecks on genome size: investigations by digital genetics". Integrative Post-Genomics, 28 novembre 2007, Lyon (France). HAL : hal-01596355.
- Yolanda Sanchez-Dehesa, Jose Maria Pena & Guillaume Beslon (2007). "Generating Data form the Evolution of Artificial Regulatory Networks". Workshop Data Mining in Functional Genomics and Proteomics. Current Trends and Future Directions co-located with ECML/PKDD 07, 21 septembre 2007, Varsovie (Poland), pp. 91-103. HAL : hal-01613779.
- Yolanda Sanchez-Dehesa, Guillaume Beslon & Jose Maria Pena (2007). "Modeling evolution of Regulatory Networks in Artificial Organisms". 3rd International Symposium on Computational Life Science CompLife'07, 4 octobre 2007, Utrecht (Netherlands), pp. 87-98. doi : 10.1063/1.2793407. HAL : hal-01613768.
- National conferences with peer review (4)
- Guillaume Beslon (2007). "Evolution de Second Ordre : le hasard sélectionné.". Spring school on interdisciplinarity in biology "Hasard et Fluctuations en Biologie", Berder (France). HAL : hal-01615166.
- Guillaume Beslon (2007). "Systems Biology, where is the network ?". Santa-Fe Institute, Santa-Fe (United States of America). HAL : hal-01615180.
- Guillaume Beslon (2007). "Digital Genetics: Modéliser la dynamique évolutive des génomes". Journées communes des clusters environnement et informatique à l'INRIA Montbonnot, Grenoble (France). HAL : hal-01615201.
- Yolanda Sanchez-Dehesa, Jose Maria Pena & Guillaume Beslon (2007). "RAevol, un modèle de génétique digitale des réseaux de régulation". Réseaux d'Interactions : Analyse, Modélisation, Simulation, RIAMS 2007, 28 novembre 2007, Lyon (France). HAL : hal-01613852.
- Others (1)
- Antoine Coulon, Guillaume Beslon & Olivier Gandrillon (2007). "Binding cooperation and competition among transcription factors can cause complex stochastic properties in gene expression". Integrative Post-Genomics, IPG'07, 29 novembre 2007, Lyon (France). Poster. HAL : hal-01613869.
- 2006 (3)
- Journals (1)
- International journals with peer review (1)
- Wolfgang Banzhaf, Guillaume Beslon, Stephen Christensen, A. James, François Képès, Virginie Lefort, F. Julian, Miroslav Radman & Jeremy J. Ramsden (2006). "Guidelines: From artificial evolution to computational evolution: a research agenda". Nature Reviews Genetics, vol. 7, #9, pp. 729-735. doi : 10.1038/nrg1921. HAL : hal-00793902.
- Conferences (2)
- National conferences with peer review (2)
- Guillaume Beslon (2006). "Evolution et Robustesse : un équilibre complexe aux conséquences inattendues.". Journées de Gerland "Systèmes complexes et biologie", 12 décembre 2006, Lyon (France). HAL : hal-01615165.
- Guillaume Beslon (2006). "Multi-Agent Modeling of Nuclear Structures.". Spring workshop on biological systems modeling, Bombannes (France). HAL : hal-01615151.