Carole Knibbe


Former LIRIS member since: 2017-08-31

Quality
Maître de conférences
Institution
Université Claude Bernard Lyon 1
Personal pagehttp://caroleknibbe.fr

Publications

Publications LIRIS pour Carole Knibbe (44)

  • 2019 (4)
  • 2018 (3)
    • Journals (2)
      • International journals with peer review (2)
        •  Carole Knibbe (2018). "Souvenirs from ECAL 2017: create, play, experiment, discover – revealing the experimental power of virtual worlds". Adaptive Behavior, vol. 26, #1, pp. 37-40. HAL : hal-01952933. .
        •  Yinan Chen, Maud Arnal-Levron, Françoise Hullin-Matsuda, Carole Knibbe, Philippe Moulin, Céline Luquain-Costaz & Isabelle Delton-Vandenbroucke (2018). "In vitro oxidized HDL and HDL from type 2 diabetes patients have reduced ability to efflux oxysterols from THP-1 macrophages". Biochimie, vol. 153, pp. 232-237. doi : 10.1016/j.biochi.2018.04.018. HAL : hal-01952968.
    • Others (1)
      •  Joel Lehman, Jeff Clune, Dusan Misevic, Christoph Adami, Julie Beaulieu, Peter J. Bentley, Samuel Bernard, Guillaume Beslon, David M. Bryson et al. (2018). "The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities". ArXiv : 1803.03453. HAL : hal-01735473.
  • 2017 (3)
    • Journals (1)
    • Conferences (2)
      • International conferences with peer review (1)
        •  Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider & Guillaume Beslon (2017). "Environmental seasonality drives digital populations towards stable cross-feeding". European Conference on Artificial Life (ECAL), 8 septembre 2017, Villeurbanne (France). HAL : hal-01569093. .
      • National conferences with peer review (1)
  • 2016 (5)
    • Journals (1)
      • International journals with peer review (1)
        •  Priscila Biller, Laurent Guéguen, Carole Knibbe & Eric Tannier (2016). "Breaking Good: Accounting for Fragility of Genomic Regions in Rearrangement Distance Estimation". Genome Biology and Evolution, vol. 8, #5, pp. 1427-1439. doi : 10.1093/gbe/evw083. HAL : hal-01334923. .
    • Conferences (3)
      • International conferences with peer review (2)
        •  Priscila Biller, Carole Knibbe, Guillaume Beslon & Eric Tannier (2016). "Comparative Genomics on Artificial Life". Computability in Europe, 27 juin 2016, Paris (France), pp. 35-44. HAL : hal-01334930.
        •  Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider & Guillaume Beslon (2016). "In Silico Experimental Evolution Highlights the Influence of Environmental Seasonality on Bacterial Diversification". 2nd EvoEvo Workshop, satellite workshop of CCS2016, 20 septembre 2016, Amsterdam (Netherlands). HAL : hal-01375677. .
      • National conferences with peer review (1)
        •  Priscila Biller, Eric Tannier, Guillaume Beslon & Carole Knibbe (2016). "In silico experimental evolution provides independent and challenging benchmarks for comparative genomics". Journées ouvertes Biologie Informatique Mathématiques, 30 juin 2016, Lyon (France), pp. 79-82. HAL : hal-01375657. .
    • Others (1)
  • 2015 (1)
    • Conferences (1)
      • International conferences with peer review (1)
  • 2014 (6)
  • 2013 (3)
    • Journals (1)
    • Conferences (1)
    • Book edition (books, chapters, seminars, congress, special numbers) (1)
      •  Carole Knibbe (2013). "L'évolution expérimentale in silico". Modéliser et simuler - Epistémologies et pratiques de la modélisation et de la simulation - Tome 1, Franck Varenne and Marc Silberstein, Editions Matériologiques, pp. 581-610. HAL : hal-00850175.
  • 2012 (3)
    • Journals (1)
      • International journals with peer review (1)
        •  Thomas Hindré, Carole Knibbe, Guillaume Beslon & Dominique Schneider (2012). "New insights into bacterial adaptation through in vivo and in silico experimental evolution". Nature Reviews Microbiology, vol. 10, pp. 352-365. HAL : hal-00696231.
    • Conferences (1)
      • International conferences with peer review (1)
    • Others (1)
      •  Bérénice Batut, Mathilde Dumond, Gabriel Marais, Guillaume Beslon & Carole Knibbe (2012). "Simulating evolutionary scenarios to test whether they can induce reductive evolution". SMBE 2012 : Society for Molecular Biology and Evolution, 26 juin 2012, Dublin (Ireland). Poster. HAL : hal-00762597.
  • 2011 (2)
    • Conferences (2)
      • International conferences with peer review (2)
        •  David Parsons, Carole Knibbe & Guillaume Beslon (2011). "Homologous and Nonhomologous Rearrangements: Interactions and Effects on Evolvability.". Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), 8 août 2011, Paris (France), pp. 622-629. HAL : hal-00696902.
        •  Carole Knibbe, David P. Parsons & Guillaume Beslon (2011). "Parsimonious modeling of scaling laws in genomes and transcriptomes". Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), 8 août 2011, Paris (France), pp. 414-415. HAL : hal-00696870.
  • 2010 (5)
  • 2009 (2)
    • Conferences (2)
      • International conferences with peer review (1)
      • National conferences with peer review (1)
  • 2008 (2)
    • Journals (1)
      • National journals with peer review (1)
    • Conferences (1)
      • National conferences with peer review (1)
        •  Guillaume Beslon, Sara Franceschelli & Carole Knibbe (2008). "Petits bricolages en évolution". "Génies de la Bricole et du Bricolage", colloque en hommage à Claude Levy-Strauss, 28 novembre 2008, Lyon (France). HAL : hal-01614309.
  • 2007 (3)
    • Journals (2)
      • National journals with peer review (2)
        •  C. Knibbe, O. Mazet, F. Chaudier, J. M. Fayard & G. Beslon (2007). "Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences". Journal of Theoretical Biology, vol. 244, #4, pp. 621-630. HAL : hal-00391449.
        •  C. Knibbe, A. Coulon, O. Mazet, J. M. Fayard & G. Beslon (2007). "A long-term evolutionary pressure on the amount of noncoding DNA". Molecular Biology and Evolution, vol. 24, #10, pp. 2344-2353. HAL : hal-00391447.
    • Conferences (1)
      • International conferences with peer review (1)
        •  Gaël Kaneko, Carole Knibbe & Guillaume Beslon (2007). "Effect of bottlenecks on genome size: investigations by digital genetics". Integrative Post-Genomics, 28 novembre 2007, Lyon (France). HAL : hal-01596355.
  • 2005 (2)
    • Conferences (1)
      • National conferences with peer review (1)
        •  G. Beslon & C. Knibbe (2005). "Modelling evolution of prokaryotic genomes: an integrative approach". FEBS Advanced Lecture Course, System Biology: From Molecules and Modeling to Cells, 3-INV (conférences invitées), Gosau (Autriche), 2005 (France), pp. 1-1. HAL : hal-00391254.
    • Book edition (books, chapters, seminars, congress, special numbers) (1)
      •  C. Knibbe, G. Beslon, F. Chaudier & J. M. Fayard (2005). "Designing artificial organisms to study the influence of gene pleitropy on genome evolution". Proceedings of the System Biology Workshop at the 8th European Conference on Artificial Life (ECAL 2005), XXX, pp. 1-1. HAL : hal-00391534.