Publications LIRIS pour David Parsons (27)

• 2024 (1)
• Conferences (1)
• International conferences with peer review (1)
•  Hugo Daudey, David Parsons, David P. Parsons, Eric Tannier, Vincent Daubin, Bastien Boussau, Vincent Liard, Romain Gallé, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2024). "Aevol 4b: Bridging the gap between artificial life and bioinformatics". ALIFE 2024 - International Conference for Artificial Life, 26 juillet 2024, Copenhague (Denmark), pp. 41-49. doi : 10.1162/isal_a_00716. HAL : hal-04667220. .
• 2023 (1)
• Journals (1)
• International journals with peer review (1)
•  Paul Banse, Juliette Luiselli, David Parsons, Théotime Grohens, Marco Foley, Leonardo Trujillo, Jonathan Rouzaud‐Cornabas, Carole Knibbe & Guillaume Beslon (2023). "Forward‐in‐time simulation of chromosomal rearrangements: The invisible backbone that sustains long‐term adaptation". Molecular Ecology. doi : 10.1111/mec.17234. HAL : hal-04350147. .
• 2021 (2)
• Book edition (books, chapters, seminars, congress, special numbers) (2)
•  Manolo Gouy, Eric Tannier, Nicolas Comte & David Parsons (2021). "Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation". Multiple Sequence Alignment, Humana, pp. 241-260. doi : 10.1007/978-1-0716-1036-7_15. HAL : hal-03065564.
•  Guillaume Beslon, Vincent Liard, David P. Parsons & Jonathan Rouzaud-Cornabas (2021). "Of Evolution, Systems and Complexity". Evolutionary Systems Biology II. doi : 10.1007/978-3-030-71737-7_1. HAL : hal-03136122. .
• 2020 (3)
• Journals (3)
• International journals with peer review (3)
•  Stéphane Gaubert, Marianne Akian, Xavier Allamigeon, Marin Boyet, Baptiste Colin, Théotime Grohens, Laurent Massoulié, David Parsons, Frederic Adnet et al. (2020). "Understanding and monitoring the evolution of the Covid-19 epidemic from medical emergency calls: the example of the Paris area". Comptes Rendus. Mathématique, vol. 358, #7, pp. 843-875. doi : 10.5802/crmath.99. ArXiv : 2005.14186. HAL : hal-02648075. .
•  Vincent Liard, David Parsons, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2020). "The complexity ratchet: Stronger than selection, stronger than evolvability, weaker than robustness". Artificial Life, vol. 26, #1, pp. 38-57. doi : 10.1162/artl_a_00312. HAL : hal-03136077. .
•  Nicolas Comte, Benoît Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin, Simon Penel, Celine Scornavacca, Manolo Gouy et al. (2020). "Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.". Bioinformatics, vol. 36, #18, pp. 4822-4824. doi : 10.1093/bioinformatics/btaa615. HAL : hal-02883386. .
• 2019 (1)
• Conferences (1)
• International conferences with peer review (1)
•  Alexander Lalejini, Emily Dolson, Clifford Bohm, Austin Ferguson, David Parsons, Penelope Faulkner Rainford, Paul Richmond & Charles Ofria (2019). "Data Standards for Artificial Life Software". ALIFE 2019 - Conference on Artificial Life, 2 août 2019, Newcastle (United Kingdom), pp. 507-514. doi : 10.1162/isal_a_00213. HAL : hal-02285716. .
• 2018 (3)
• Conferences (1)
• International conferences with peer review (1)
•  Vincent Liard, David Parsons, Jonathan Rouzaud-Cornabas & Guillaume Beslon (2018). "The Complexity Ratchet: Stronger than selection, weaker than robustness". ALIFE 2018 - the 2018 conference on artificial Life, 27 juillet 2018, Tokyo (Japan), pp. 1-8. doi : 10.1162/isal_a_00051. HAL : hal-01882628. .
• Others (2)
•  Guillaume Beslon, Vincent Liard, David P. Parsons & Jonathan Rouzaud-Cornabas (2018). "In silico experimental evolution shows that complexity can rise even in simple environments". ICSB 2018 - 19th International Conference on Systems Biology, 1 novembre 2018, Lyon (France). Poster. HAL : hal-01939365. .
•  Vincent Liard, Jonathan Rouzaud-Cornabas, David Parsons & Guillaume Beslon (2018). "The complexity ratchet: stronger than selection". Beacon congress 2018, 11 août 2018, east-lansing (United States of America). Poster. HAL : hal-01938802. .
• 2014 (1)
• Conferences (1)
• International conferences with peer review (1)
•  Carole Knibbe & David Parsons (2014). "What happened to my genes? Insights on gene family dynamics from digital genetics experiments". ALIFE 14 (14th Intl. Conf. on the Synthesis and Simulation of Living Systems), 30 juillet 2014, New York, NY (United States of America), pp. 33-40. doi : 10.7551/978-0-262-32621-6-ch006. HAL : hal-01093110.
• 2013 (2)
• Journals (1)
• International journals with peer review (1)
•  Bérénice Batut, David P. Parsons, Stephan Fischer, Guillaume Beslon & Carole Knibbe (2013). "In silico experimental evolution: a tool to test evolutionary scenarios". BMC Bioinformatics, vol. 14, Suppl 15, S11. HAL : hal-00873232. .
• Conferences (1)
• International conferences with peer review (1)
•  Guillaume Beslon, Bérénice Batut, David P. Parsons, Dominique Schneider & Carole Knibbe (2013). "An alife game to teach evolution of antibiotic resistance". ECAL - 12th European Conference on Artificial Life - 2013, 6 septembre 2013, Taormina (Italy), pp. 43-50. HAL : hal-00849345.
• 2012 (2)
• Conferences (2)
• International conferences with peer review (2)
•  Dusan Misevic, Antoine Frenoy, David Parsons & Francois Taddei (2012). "Effects of public good properties on the evolution of cooperation". Proceedings of Artificial Life XIII, 22 juillet 2012, East Lansing (United States of America), pp. 218-225. HAL : hal-00759140.
•  David Parsons, Carole Knibbe & Guillaume Beslon (2012). "The Paradoxical Effects of Allelic Recombination on Fitness". Proceedings of Artificial Life XIII, 22 juillet 2012, East Lansing (France), pp. 536-537. HAL : hal-00759142.
• 2011 (2)
• Conferences (2)
• International conferences with peer review (2)
•  David Parsons, Carole Knibbe & Guillaume Beslon (2011). "Homologous and Nonhomologous Rearrangements: Interactions and Effects on Evolvability.". Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), 8 août 2011, Paris (France), pp. 622-629. HAL : hal-00696902.
•  Carole Knibbe, David P. Parsons & Guillaume Beslon (2011). "Parsimonious modeling of scaling laws in genomes and transcriptomes". Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), 8 août 2011, Paris (France), pp. 414-415. HAL : hal-00696870.
• 2010 (6)
• Journals (2)
• International journals with peer review (2)
•  Guillaume Beslon, David P. Parsons, Jose-Maria Pena, Christophe Rigotti & Yolanda Sanchez-Dehesa (2010). "From Digital Genetics to Knowledge Discovery: Perspectives in Genetic Network Understanding". Intelligent Data Analysis, vol. 14, #2, pp. 173-191. doi : 10.3233/IDA-2010-0415. HAL : hal-00697024.
•  Guillaume Beslon, David Parsons, Yolanda Sanchez-Dehesa, Jose-Maria Peña & Carole Knibbe (2010). "Scaling Laws in Bacterial Genomes: A Side-Effect of Selection of Mutational Robustness". BioSystems, vol. 102, #1, pp. 32-40. doi : 10.1016/j.biosystems.2010.07.009. HAL : inria-00593709.
• Conferences (4)
• International conferences with peer review (1)
•  David P. Parsons, Carole Knibbe & Guillaume Beslon (2010). "Importance of the rearrangement rates on the organization of transcription.". Proceedings of Artificial Life XII, 19 août 2010, Odense (Denmark), pp. 479-486. HAL : hal-00697043.
• National conferences with peer review (3)
•  David P. Parsons, Carole Knibbe & Guillaume Beslon (2010). "Influence of the rearrangement rates on the organization of genome transcription". Integrative Post-Genomics, 25 novembre 2010, Lyon (France), inconnue. HAL : hal-01381618.
•  David P. Parsons, Carole Knibbe & Guillaume Beslon (2010). "Influence of the rearrangement rates on the organization of genome transcription". JOBIM, 7 juin 2010, Montpellier (France), inconnue. HAL : hal-01381518.
•  David P. Parsons, Carole Knibbe & Guillaume Beslon (2010). "Aevol : un modèle individu-centré pour l’étude de la structuration des génomes". MajecSTIC, 13 octobre 2010, Bordeaux (France), inconnue. HAL : hal-01381560.
• 2009 (2)
• Conferences (2)
• International conferences with peer review (1)
•  Guillaume Beslon, Yolanda Sanchez-Dehesa, David P. Parsons, Jose Maria Pena & Carole Knibbe (2009). "Scaling Laws in Digital Organisms". Proc. Information Processing in Cells and Tissues IPCAT'09, 5 avril 2009, Ascona (Switzerland), pp. 111-114. HAL : hal-01437632.
• National conferences with peer review (1)
•  David P. Parsons, Guillaume Beslon, Carole Knibbe, Yolanda Sanchez-Dehesa & Jose Maria Pena (2009). "Evolution of scaling laws in artificial regulation networks". Integrative Post-Genomics, 18 novembre 2009, Lyon (France), pp. 22-22. HAL : hal-01437814.
• 2008 (1)
• Journals (1)
• International journals with peer review (1)
•  Yolanda Sanchez-Dehesa, David P. Parsons, Jose Maria Pena & Guillaume Beslon (2008). "Modelling Evolution of Regulatory Networks in Artificial Bacteria". Mathematical Modelling of Natural Phenomena, vol. 3, pp. 27-66. doi : 10.1051/mmnp:2008054. HAL : hal-01500393. .